proteinCodingCount: get total protein coding count from count dataframe

In cmatKhan/brentlabRnaSeqTools: A Collection of Functions to Interact with the Brentlab RNASeq Database

Description

given a count dataframe with gene_ids as rownames and quantification in a column called raw_counts, return sum of protein coding genes

Usage

proteinCodingCount(counts, protein_coding_gene_ids)

Arguments

counts	a dataframe with gene_ids in the rownames and (at minimum) a quantification column called raw_counts
protein_coding_gene_ids	a list of gene ids considered protein coding (must correspond with counts rownames)

cmatKhan/brentlabRnaSeqTools documentation built on Nov. 17, 2021, 5:47 a.m.