featureGRanges: Given a GenomicFeatures annotation_db and a gene_id, extract...
In cmatKhan/brentlabRnaSeqTools: A Collection of Functions to Interact with the Brentlab RNASeq Database
Description
Usage
Arguments
Value
References
Description
Given a GenomicFeatures annotation_db and a gene_id, extract an GRanges object of the cds
Usage
1
featureGRanges(annotation_db, gene_id, feature)
Arguments
annotation_db
a GenomicFeatures db. You can either get this from the bioconductor resources, or create your own with a gtf
gene_id
the ID of a gene in the db. Eg, for cryptococcus CKF44_05222
feature
one of c("cds", "exon"), determins which feature to extract from the annotations
Value
an IRanges object of the given gene's exons
References
GenomicRanges::GRanges, GenomicFeatures
cmatKhan/brentlabRnaSeqTools documentation built on Nov. 17, 2021, 5:47 a.m.
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Description Usage Arguments Value References
Description
Given a GenomicFeatures annotation_db and a gene_id, extract an GRanges object of the cds
Usage
1 | featureGRanges(annotation_db, gene_id, feature)
|
Arguments
annotation_db |
a GenomicFeatures db. You can either get this from the bioconductor resources, or create your own with a gtf |
gene_id |
the ID of a gene in the db. Eg, for cryptococcus CKF44_05222 |
feature |
one of c("cds", "exon"), determins which feature to extract from the annotations |
Value
an IRanges object of the given gene's exons
References
GenomicRanges::GRanges, GenomicFeatures
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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