postQcSheet: post new qc sheet to database

In cmatKhan/brentlabRnaSeqTools: A Collection of Functions to Interact with the Brentlab RNASeq Database

Description

using the package httr, post the new qc sheet to the database

Usage

postQcSheet(database_qc_url, auth_token, run_number, new_qc_path, fastq_table)

Arguments

database_qc_url	eg database_info$kn99_urls$QualityAssess. see database_info.
auth_token	getUserAuthToken
run_number	the run number of this qc sheet – this is important b/c fastqFileNames aren't necessarily unique outside of their runs
new_qc_path	path to the new counts csv
fastq_table	a recent pull of the database fastq table

Value

a list of httr::response() objects

Note

there can be problems with dependencies and the rename function. this is working for now, but see here for more info https://statisticsglobe.com/r-error-cant-rename-columns-that-dont-exist

cmatKhan/brentlabRnaSeqTools documentation built on Nov. 17, 2021, 5:47 a.m.