rlePlotCompareEffectRemoved: plots output of rleSummaryByReplicateGroup
In cmatKhan/brentlabRnaSeqTools: A Collection of Functions to Interact with the Brentlab RNASeq Database
Description
Usage
Arguments
Value
Description
plots output of rleSummaryByReplicateGroup
Usage
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rlePlotCompareEffectRemoved(
norm_counts_rle,
removed_effect_rle,
metadata_df,
title
)
Arguments
norm_counts_rle
output of calculateRLE (maybe one of the sublists in rleByReplicateGroup())
removed_effect_rle
see norm_counts_rle, but after removing some batch effects
metadata_df
metadata with at least FASTQFILENAME and LIBRARYDATE
title
title of the plot
Value
a ggplot with both the norm counts (more transparent) and removedEffect 'counts' on the same plot
cmatKhan/brentlabRnaSeqTools documentation built on Nov. 17, 2021, 5:47 a.m.
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Description Usage Arguments Value
Description
plots output of rleSummaryByReplicateGroup
Usage
1 2 3 4 5 6 | rlePlotCompareEffectRemoved(
norm_counts_rle,
removed_effect_rle,
metadata_df,
title
)
|
Arguments
norm_counts_rle |
output of calculateRLE (maybe one of the sublists in rleByReplicateGroup()) |
removed_effect_rle |
see norm_counts_rle, but after removing some batch effects |
metadata_df |
metadata with at least FASTQFILENAME and LIBRARYDATE |
title |
title of the plot |
Value
a ggplot with both the norm counts (more transparent) and removedEffect 'counts' on the same plot
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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