plot_rho_delta: Plots the decision map of density clusters .
In cole-trapnell-lab/monocle-release: Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq
Description
Usage
Arguments
Examples
Description
Plots the decision map of density clusters .
Usage
1
plot_rho_delta(cds, rho_threshold = NULL, delta_threshold = NULL)
Arguments
cds
CellDataSet for the experiment after running clusterCells_Density_Peak
rho_threshold
The threshold of local density (rho) used to select the density peaks for plotting
delta_threshold
The threshold of local distance (delta) used to select the density peaks for plotting
Examples
1
2
3
4
5
6
## Not run:
library(HSMMSingleCell)
HSMM <- load_HSMM()
plot_rho_delta(HSMM)
## End(Not run)
cole-trapnell-lab/monocle-release documentation built on May 13, 2019, 8:50 p.m.
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Description Usage Arguments Examples
Description
Plots the decision map of density clusters .
Usage
1 | plot_rho_delta(cds, rho_threshold = NULL, delta_threshold = NULL)
|
Arguments
cds |
CellDataSet for the experiment after running clusterCells_Density_Peak |
rho_threshold |
The threshold of local density (rho) used to select the density peaks for plotting |
delta_threshold |
The threshold of local distance (delta) used to select the density peaks for plotting |
Examples
1 2 3 4 5 6 | ## Not run:
library(HSMMSingleCell)
HSMM <- load_HSMM()
plot_rho_delta(HSMM)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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