Man pages for crazyhottommy/scATACutils
What the Package Does (One Line, Title Case)
| addGeneNameToTxdb | Add Gene sybmol to the GRanges object after calling... |
| CalculateBandingScore | Calculate Banding scores for all cells |
| CalculateFripScore | Calculate Fragments Fraction of reads in peaks (FRiP) score |
| checkClass | checkClass function |
| extend | Extend a GRanges object upstream and downstream |
| get_banding_score | Calculate banding score for a single cell |
| pipe | Pipe operator |
| PlotCoverageByCell | Plot raw count signal from scATACseq data per cell in heatmap |
| PlotCoverageByGroup | Plot scATACseq coverage for each cluster from tabix indexed... |
| PlotMotifFootPrint | Plot Transcription factor motif footprint in heatmap and... |
| PlotPCcorrelation | Plot Correlation of PCs with a metadata column of a Seurat... |
| PlotScatter | Plot scatter plot of log10 depth vs FRIP or TSS score for... |
| ReadFragments | Read in the fragment.tsv.gz file into memory as a... |
| ReadFragmentsTabix | Read in the fragment.tsv.gz file using Rsamtools::scanTabix... |
| TssEnrichmentFromFrags | Calculate tss enrichment score from 10xscATAC... |
