addGeneNameToTxdb | Add Gene sybmol to the GRanges object after calling... |
CalculateBandingScore | Calculate Banding scores for all cells |
CalculateFripScore | Calculate Fragments Fraction of reads in peaks (FRiP) score |
checkClass | checkClass function |
extend | Extend a GRanges object upstream and downstream |
get_banding_score | Calculate banding score for a single cell |
pipe | Pipe operator |
PlotCoverageByCell | Plot raw count signal from scATACseq data per cell in heatmap |
PlotCoverageByGroup | Plot scATACseq coverage for each cluster from tabix indexed... |
PlotMotifFootPrint | Plot Transcription factor motif footprint in heatmap and... |
PlotPCcorrelation | Plot Correlation of PCs with a metadata column of a Seurat... |
PlotScatter | Plot scatter plot of log10 depth vs FRIP or TSS score for... |
ReadFragments | Read in the fragment.tsv.gz file into memory as a... |
ReadFragmentsTabix | Read in the fragment.tsv.gz file using Rsamtools::scanTabix... |
TssEnrichmentFromFrags | Calculate tss enrichment score from 10xscATAC... |
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