ReadFragments: Read in the fragment.tsv.gz file into memory as a...

In crazyhottommy/scATACutils: What the Package Does (One Line, Title Case)

Description

Read in the fragment.tsv.gz file into memory as a GenomicsRanges object

Usage

ReadFragments(frag_gz_file, cutSite = TRUE)

Arguments

frag_gz_file	fragment.tsv.gz file from 10x cellranger output
cutSite	whether use the cut sites instead of the whole fragmeng. Default TRUE for footprint

Value

A GenomicRanges object

Examples

## Not run: 
insertions<- ReadFragments("~/5k_pbmc_atac/fragments.tsv.gz", cutSite = TRUE)

## End(Not run)

crazyhottommy/scATACutils documentation built on June 15, 2020, 9:31 p.m.