Description Usage Arguments Value
View source: R/CalculateBandingScore.R
A banding score is a measure signals of nucleosomal periodicity in their fragment size distribution. see Darren et.al.2018 The input of this function is calculated by a python script: get_insert_size_distribution_per_cell.py possorted_bam.bam pbmc_5k_insert_size.txt –barcodes barcodes.tsv
1 | CalculateBandingScore(df, barcodeList = NULL)
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df |
A dataframe with 3 columns. cell column contains the cell barcode for all cells, insert_size column contains the insert size, read_count column contains the number of paired reads for that insert size |
barcodeList |
a vector of valid barcodes. e.g. the first column of barcodes.tsv from 10x |
Banding scores for all cells.
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