PlotMotifFootPrint: Plot Transcription factor motif footprint in heatmap and...
In crazyhottommy/scATACutils: What the Package Does (One Line, Title Case)

Plot Transcription factor motif footprint in heatmap and lineplot

1 2	PlotMotifFootPrint(PWM, peaks, cvg, extend = 100, genome = "hg19", heatmap_col = c("white", "red"), lineplot_cols = c("blue", "red"))

`PWM`	TF position weight matrix
`peaks`	A GenomicRanges for the ATACseq peaks
`cvg`	coverage of the cutsite (from the fragment.tsv.gz file)
`extend`	basepair to extend for the motif. 100bp by default
`genome`	hg19, hg38 or mm9, mm10
`heatmap_col`	heatmap color for min and max values
`lineplot_cols`	lineplot color for the line and dotted vertical line