CalculateFripScore: Calculate Fragments Fraction of reads in peaks (FRiP) score
In crazyhottommy/scATACutils: What the Package Does (One Line, Title Case)
Description
Usage
Arguments
Value
Examples
View source: R/calculatefripscore.R
Description
The fragments.tsv.gz file from 10x cellranger_atac output contains all barcodes found from
the bam file. one can provide a valid barcode vector to filter those out if needed.
Usage
1
CalculateFripScore(frag_gz_file, peaks, barcodeList = NULL)
Arguments
frag_gz_file
a fragment.tsv.gz file output from 10x cellranger-atac.
peaks
a 3 column bed file for called peaks.
Value
a tibble with 3 columns: sample, depth, Frip score.
Examples
1
2
3
4
## Not run:
CalculateFripScore("fragments.tsv.gz", "peaks.bed")
## End(Not run)
crazyhottommy/scATACutils documentation built on June 15, 2020, 9:31 p.m.
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Description Usage Arguments Value Examples
View source: R/calculatefripscore.R
Description
The fragments.tsv.gz file from 10x cellranger_atac output contains all barcodes found from the bam file. one can provide a valid barcode vector to filter those out if needed.
Usage
1 | CalculateFripScore(frag_gz_file, peaks, barcodeList = NULL)
|
Arguments
frag_gz_file |
a fragment.tsv.gz file output from 10x cellranger-atac. |
peaks |
a 3 column bed file for called peaks. |
Value
a tibble with 3 columns: sample, depth, Frip score.
Examples
1 2 3 4 | ## Not run:
CalculateFripScore("fragments.tsv.gz", "peaks.bed")
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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