ReadFragmentsTabix: Read in the fragment.tsv.gz file using Rsamtools::scanTabix...
In crazyhottommy/scATACutils: What the Package Does (One Line, Title Case)
Description
Usage
Arguments
Value
View source: R/plotcoveragebycell.R
Description
Read in the fragment.tsv.gz file using Rsamtools::scanTabix for a specific region to
speed up
Usage
1
ReadFragmentsTabix(fragment, gr, barcodeList, cutSite = FALSE)
Arguments
gr
A GenomicRanges
barcodeList
A vector of valid barcode to include
cutSite
whether or not using the cutting sites instead of the whole fragment
the
fragment.tsv.gz file need to be tabix indexed.
Value
A GenomicRanges within the specified region
crazyhottommy/scATACutils documentation built on June 15, 2020, 9:31 p.m.
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Description Usage Arguments Value
View source: R/plotcoveragebycell.R
Description
Read in the fragment.tsv.gz file using Rsamtools::scanTabix for a specific region to speed up
Usage
1 | ReadFragmentsTabix(fragment, gr, barcodeList, cutSite = FALSE)
|
Arguments
gr |
A GenomicRanges |
barcodeList |
A vector of valid barcode to include |
cutSite |
whether or not using the cutting sites instead of the whole fragment |
the |
fragment.tsv.gz file need to be tabix indexed. |
Value
A GenomicRanges within the specified region
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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