PlotPCcorrelation: Plot Correlation of PCs with a metadata column of a Seurat...

In crazyhottommy/scATACutils: What the Package Does (One Line, Title Case)

Description

Plot Correlation of PCs with a metadata column of a Seurat object or a SingleCellExperiment object

Usage

PlotPCcorrelation(object, reduction = "lsi", column = "nCount_ATAC",
  method = "spearman")

Arguments

object	A Seurat or SingleCellExperiment Object
reduction	The reduction name. e.g. pca, lsi, PCA, LSI
column	the name of the metadata column or ColData
method	correlation method, see cor

Value

A ggplot2 scatter plot

Examples

## Not run: 
PlotPCcorrelation(pbmc_seurat, reduction = "lsi")

## End(Not run)

crazyhottommy/scATACutils documentation built on June 15, 2020, 9:31 p.m.