An R-package for breakpoint detection in single cell Strand-seq data.
Collaborators: David Porubsky, Ashley D. Sanders, Aaron Taudt
To install the current stable version from Bioconductor, please visit http://bioconductor.org/packages/breakpointR/
To install the development version from Github, follow the steps given below. The installation has only been tested on Ubuntu so far, if you need to install on Windows or Mac additional steps might be necessary (e.g. installation of Rtools from https://cran.r-project.org/bin/windows/Rtools/)
#### To install required packages if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") install("GenomicRanges") install("GenomicAlignments") install.packages("devtools") library(devtools)
Please refert to the vignette for tutorials on all breakpointR features.
If you encounter errors of any kind, please report an issue here.
The breakpointR package is currently under development and contains unpublished work. Any usage for publishing is strictly prohibited without permission.
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