plotBreakpointsPerChr: Plotting chromosome specific ideograms 'breakpointR'

In daewoooo/breakpointR: Find breakpoints in Strand-seq data

Plotting chromosome specific ideograms breakpointR

Description

This function will create chromsome specific enome-wide ideograms from a BreakPoint object.

Usage

plotBreakpointsPerChr(files2plot, plotspath = NULL, chromosomes = NULL)

Arguments

files2plot	A list of files that contains BreakPoint objects or a single BreakPoint object.
plotspath	Directory to store plots.
chromosomes	Set specific chromosome(s) to be plotted.

Value

A list with ggplot objects.

Author(s)

David Porubsky

Examples

## Get an example file
exampleFolder <- system.file("extdata", "example_results", package="breakpointRdata")
exampleFiles <- list.files(exampleFolder, full.names=TRUE)
## Plot results
plotBreakpointsPerChr(exampleFiles, chromosomes='chr7')

daewoooo/breakpointR documentation built on April 20, 2023, 4:13 p.m.