removeDoubleSCEs: Process double SCE chromosomes: with internal WC region.

View source: R/utils.R

removeDoubleSCEsR Documentation

Process double SCE chromosomes: with internal WC region.

Description

This function will take from a double SCE chromosome only WW or CC region (Longer region is taken).

Usage

removeDoubleSCEs(gr, collapseWidth = 5e+06)

Arguments

gr

A GRanges-class object.

collapseWidth

A segment size to be collapsed with neighbouring segments.

Value

The input GRanges-class object with only WW or CC region retained.


daewoooo/breakpointR documentation built on Aug. 4, 2022, 11:21 p.m.