deltaWCalculatorVariousWindows: Calculate deltaWs using various window sizes

View source: R/deltaWCalculator.R

deltaWCalculatorVariousWindowsR Documentation

Calculate deltaWs using various window sizes

Description

This function will calculate deltaWs from a GRanges-class object with read fragments.

Usage

deltaWCalculatorVariousWindows(
  frags,
  reads.per.window = 100,
  multi.sizes = c(2, 4, 6)
)

Arguments

frags

A GRanges-class with read fragments (see readBamFileAsGRanges).

reads.per.window

Number of reads in each dynamic window.

multi.sizes

User defined multiplications of the original window size.

Value

The input frags with additional meta-data columns.

Author(s)

David Porubsky

See Also

deltaWCalculator


daewoooo/breakpointR documentation built on Aug. 4, 2022, 11:21 p.m.