API for dajiangliu/rareGWAMA
Meta-Analysis of Gene-level Rare Variant Association Test in Whole Genome Datasets
| Global functions | |
|---|---|
| ColSums | Man page Source code |
| GWAMA.formatData | Man page Source code |
| GWAMA.rmMulti | Man page Source code |
| GWAMA.single | Man page Source code |
| Mean | Man page Source code |
| QC | Source code |
| RVMETA.conditional | Source code |
| RVMETA.pool | Source code |
| RowSums | Man page Source code |
| SKAT.perm.stat | Source code |
| Sum | Man page Source code |
| binary.rareMETALS.single.group | Man page Source code |
| binom.conf | Man page Source code |
| calc.r2 | Man page Source code |
| calcGeneLevelTest | Man page Source code |
| check.mono | Source code Source code Source code |
| colCenter | Man page Source code |
| cond.rvmeta | Source code |
| cond.rvmeta.core | Source code |
| conditional.rareMETALS.gene.basic | Source code |
| conditional.rareMETALS.gene.byKnownVariant | Source code |
| conditional.rareMETALS.gene.byLocus | Source code |
| conditional.rareMETALS.range | Man page Source code |
| conditional.rareMETALS.range.group | Man page Source code |
| conditional.rareMETALS.single | Man page Source code |
| conditional.rareMETALS.single.group | Man page Source code |
| conditional.rareMETALS.single.group.core | Man page Source code |
| convertChisq2Beta | Man page Source code |
| davies.vec | Source code |
| estimateH2 | Man page Source code |
| find.gene.chrpos | Man page Source code |
| find.top.variant | Man page Source code |
| fisher.gene | Source code |
| fisher.p | Source code |
| flip.score.cov | Source code Source code Source code |
| flipAllele | Man page Source code |
| genomic.dist | Man page Source code |
| get.conditional.score.stat | Man page Source code |
| get.conditional.score.stat.RE | Man page Source code |
| get.eigen | Source code |
| get.gene.inWindow | Man page Source code |
| get.tabix.range | Man page Source code |
| getCondUV | Source code |
| getImpQual | Man page Source code |
| imputeConditional | Man page Source code |
| imputeMeta | Man page Source code |
| meta.p | Source code |
| min.p | Source code Source code |
| min.p.gene | Source code |
| multiAlleleAssoc | Man page Source code |
| myFormat | Man page Source code |
| paste.pos | Man page Source code |
| pmaxnorm | Source code |
| pmaxnormsq | Source code |
| pminnorm | Source code |
| popgen.stat | Source code |
| prepare.mega.input | Source code |
| prepare.meta.input | Source code |
| prepare.pool.input | Source code |
| prune.cor | Source code |
| prune.ped | Source code |
| pvt | Source code |
| pvt.core | Source code |
| pwrCalc | Man page Source code |
| r2cov.mat | Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code |
| rareGWAMA.TWAS | Man page Source code |
| rareGWAMA.burden | Man page Source code |
| rareGWAMA.cond.gene | Man page Source code |
| rareGWAMA.cond.single | Man page Source code |
| rareGWAMA.cond.single.msso | Man page Source code |
| rareGWAMA.estH2 | Man page Source code |
| rareGWAMA.formatGene | Man page Source code |
| rareGWAMA.gene | Man page Source code |
| rareGWAMA.single | Man page Source code |
| rareGWAMA.single.multiAllele | Man page Source code |
| rareGWAMA.skat | Man page Source code |
| rareGWAMA.t | Man page Source code |
| rareGWAMA.vt | Man page Source code |
| rareMETALS.calcGC | Man page Source code |
| rareMETALS.cleanScore | Man page Source code |
| rareMETALS.estimatePVE | Man page Source code |
| rareMETALS.gene | Man page Source code |
| rareMETALS.gene.group | Man page Source code |
| rareMETALS.gene.pool | Source code |
| rareMETALS.parseAnno | Man page Source code |
| rareMETALS.range | Man page Source code |
| rareMETALS.range.core | Man page Source code |
| rareMETALS.range.group | Man page Source code |
| rareMETALS.range.group.core | Man page Source code |
| rareMETALS.single | Man page Source code |
| rareMETALS.single.correctRefAlt | Man page Source code |
| rareMETALS.single.group | Man page Source code |
| read.ms.output | Source code |
| readms.output | Source code |
| regMat | Man page Source code Source code |
| rm.na | Man page Source code |
| rvmeta.CMH | Man page Source code |
| rvmeta.CMH.single | Source code |
| rvmeta.CMH.skat | Source code |
| rvmeta.CMH.stepup | Source code |
| rvmeta.CMH.vt | Source code |
| rvmeta.CMH.wss | Source code |
| rvmeta.approx.mega | Source code |
| rvmeta.inVAR.single | Source code |
| rvmeta.p | Source code |
| rvmeta.sim | Source code |
| rvmeta.sumstat | Source code |
| set.intersect | Man page Source code |
| sortPos | Man page Source code |
| splitVecByChunkSize | Man page Source code |
| toMinor | Man page Man page Source code Source code |
| uniq.allele | Man page Source code |
