rareMETALS.single: Single variant meta-analysis

In dajiangliu/rareGWAMA: Meta-Analysis of Gene-level Rare Variant Association Test in Whole Genome Datasets

Description

Single variant meta-analysis

Usage

rareMETALS.single(score.stat.file, cov.file, range,
  alternative = c("two.sided", "greater", "less"), ix.gold = 1,
  callrate.cutoff = 0, hwe.cutoff = 0)

Arguments

score.stat.file	files of score statistics
cov.file	covariance matrix files
range	tabix range of variants to be analyzed
alternative	alternative hypothesis to be specified
ix.gold	Gold standard population to align reference allele to
callrate.cutoff	Cutoffs of call rate, lower than which will NOT be analyzed (labelled as missing)
hwe.cutoff	Cutoffs of HWE p-values

Value

a list consisting of results

dajiangliu/rareGWAMA documentation built on Sept. 13, 2019, 9:14 a.m.