Files in dajiangliu/rareGWAMA

Meta-Analysis of Gene-level Rare Variant Association Test in Whole Genome Datasets

R/GWAMA.single.R R/QC.R R/RVMETA.conditional.R R/binary.rareMETALS.single.group.R R/cond.rvmeta.R R/cond.rvmeta.core.R R/conditional.rareMETALS.gene.R R/conditional.rareMETALS.gene.byKnownVariant.R R/conditional.rareMETALS.gene.byLocus.R R/conditional.rareMETALS.range.R R/conditional.rareMETALS.range.group.R R/conditional.rareMETALS.single.R R/conditional.rareMETALS.single.group.R R/davies.R R/find.gene.R R/fisher.R R/fisher.gene.R R/fisher.p.R R/meta.p.R R/min.p.R R/min.p.gene.R R/myUtils.R R/prepare.input.R R/pvt.R R/rareGWAMA.TWAS.R R/rareGWAMA.conditional.gene.R R/rareGWAMA.conditional.single.R R/rareGWAMA.conditional.single.msso.R R/rareGWAMA.estH2.R R/rareGWAMA.gene.core.R R/rareGWAMA.single.R R/rareGWAMA.utils.R R/rareMETALS.calcGC.R R/rareMETALS.cleanScore.R R/rareMETALS.estimatePVE.R R/rareMETALS.gene.R R/rareMETALS.gene.pool.R R/rareMETALS.group.R R/rareMETALS.parseAnno.R R/rareMETALS.range.R R/rareMETALS.range.group.R R/rareMETALS.single.R R/rareMETALS.single.correctRefAlt.R R/rareMETALS.single.group.R R/rareMETALS2.utils.R R/read.ms.output.R R/rvmeta.CMH.R R/rvmeta.CMH.single.R R/rvmeta.CMH.skat.R R/rvmeta.CMH.stepup.R R/rvmeta.CMH.vt.R R/rvmeta.CMH.wss.R R/rvmeta.R R/rvmeta.approx.mega.R R/rvmeta.inVAR.single.R R/rvmeta.sim.R R/sortPos.R README.md man/ColSums.Rd man/GWAMA.formatData.Rd man/GWAMA.rmMulti.Rd man/GWAMA.single.Rd man/Mean.Rd man/RowSums.Rd man/Sum.Rd man/binary.rareMETALS.single.group.Rd man/binom.conf.Rd man/calc.r2.Rd man/calcGeneLevelTest.Rd man/colCenter.Rd man/conditional.rareMETALS.range.Rd man/conditional.rareMETALS.range.group.Rd man/conditional.rareMETALS.single.Rd man/conditional.rareMETALS.single.group.Rd man/conditional.rareMETALS.single.group.core.Rd man/convertChisq2Beta.Rd man/estimateH2.Rd man/find.gene.chrpos.Rd man/find.top.variant.Rd man/flipAllele.Rd man/genomic.dist.Rd man/get.conditional.score.stat.RE.Rd man/get.conditional.score.stat.Rd man/get.gene.inWindow.Rd man/get.tabix.range.Rd man/getImpQual.Rd man/imputeConditional.Rd man/imputeMeta.Rd man/multiAlleleAssoc.Rd man/myFormat.Rd man/paste.pos.Rd man/pwrCalc.Rd man/rareGWAMA.TWAS.Rd man/rareGWAMA.burden.Rd man/rareGWAMA.cond.gene.Rd man/rareGWAMA.cond.single.Rd man/rareGWAMA.cond.single.msso.Rd man/rareGWAMA.estH2.Rd man/rareGWAMA.formatGene.Rd man/rareGWAMA.gene.Rd man/rareGWAMA.single.Rd man/rareGWAMA.single.multiAllele.Rd man/rareGWAMA.skat.Rd man/rareGWAMA.t.Rd man/rareGWAMA.vt.Rd man/rareMETALS.calcGC.Rd man/rareMETALS.cleanScore.Rd man/rareMETALS.estimatePVE.Rd man/rareMETALS.gene.Rd man/rareMETALS.gene.group.Rd man/rareMETALS.parseAnno.Rd man/rareMETALS.range.Rd man/rareMETALS.range.core.Rd man/rareMETALS.range.group.Rd man/rareMETALS.range.group.core.Rd man/rareMETALS.single.Rd man/rareMETALS.single.correctRefAlt.Rd man/rareMETALS.single.group.Rd man/regMat.Rd man/rm.na.Rd man/rvmeta.CMH.Rd man/set.intersect.Rd man/sortPos.Rd man/splitVecByChunkSize.Rd man/toMinor.Rd man/uniq.allele.Rd