Files in dbdimitrov/BugleSeq
BingleSeq RNA-Seq Data Analysis
.Rbuildignore
.Rhistory
.gitignore
BingleSeq.Rproj
DESCRIPTION
LICENSE
NAMESPACE
R/bulk_compDataTab.R
R/bulk_deDataTab.R
R/bulk_filterDataTab.R
R/bulk_footprintTab.R
R/bulk_goDataTab.R
R/bulk_loadDataTab.R
R/bulk_plotDataTab.R
R/sc_clustTab.R
R/sc_compTab.R
R/sc_deTab.R
R/sc_footprintTab.R
R/sc_goTab.R
R/sc_loadDataTab.R
R/sc_normTab.R
R/sc_qcTab.R
R/server.R
R/startApp.R
R/ui.R
README.md
figures/Bulk.png
figures/Bulk_format.jpg
figures/batchCorrected.jpg
figures/bulk_GOhist.jpg
figures/bulk_GOquery.PNG
figures/bulk_GOresults.PNG
figures/bulk_GOtab.PNG
figures/bulk_compRank.PNG
figures/bulk_compVenn.PNG
figures/bulk_deData.PNG
figures/bulk_heatmap.PNG
figures/bulk_loadData.PNG
figures/bulk_qcData.PNG
figures/bulk_visData.PNG
figures/footprint.PNG
figures/meta_format.jpg
figures/sc.jpg
figures/sc3tSNE.png
figures/sc_clustElbow.PNG
figures/sc_clustHeat.PNG
figures/sc_clustMonocle.PNG
figures/sc_clustSC3.PNG
figures/sc_clustSeurat.PNG
figures/sc_deFigs.PNG
figures/sc_deTab.PNG
figures/sc_format.jpg
figures/sc_normData.PNG
figures/sc_qcData.PNG
figures/sc_variancePlot.PNG
inst/extdata/MockvsIFN.txt
inst/extdata/hg19/barcodes.tsv
inst/extdata/hg19/genes.tsv
inst/extdata/hg19/matrix.mtx
inst/extdata/m_ifn.csv
man/barTable.Rd
man/batchComBat.Rd
man/batchHarman.Rd
man/bulk_compData.Rd
man/bulk_compDataUI.Rd
man/bulk_deData.Rd
man/bulk_deDataUI.Rd
man/bulk_faData.Rd
man/bulk_faDataUI.Rd
man/bulk_filterData.Rd
man/bulk_filterDataUI.Rd
man/bulk_goData.Rd
man/bulk_goDataUI.Rd
man/bulk_loadData.Rd
man/bulk_loadDataUI.Rd
man/bulk_plotData.Rd
man/bulk_plotDataUI.Rd
man/clusterMonocle.Rd
man/convert_gene_type.Rd
man/deEdgeR.Rd
man/deLimma.Rd
man/dePipelineCaller.Rd
man/deSequence.Rd
man/fetch_regulons.Rd
man/fetch_tf_activities.Rd
man/fetch_tfs_per_sample.Rd
man/filterFunction.Rd
man/genePlot.Rd
man/generateIntersect.Rd
man/generateSummary.Rd
man/getAllDE.Rd
man/getClusterHeatmap.Rd
man/getDEgenes.Rd
man/getGenesetsGO.Rd
man/getIntersect.Rd
man/get_pathway_activity.Rd
man/get_pathway_activity_per_sample.Rd
man/get_progeny_scatter.Rd
man/goInfo.Rd
man/histGoTerms.Rd
man/load10xData.Rd
man/normalizeSeurat.Rd
man/plotAllVenn.Rd
man/plotBarChart.Rd
man/plotHeatmapTop.Rd
man/plotMA.Rd
man/plotPCA.Rd
man/plotScree.Rd
man/plotVP.Rd
man/plot_tfa_per_sample.Rd
man/plot_top_tfs.Rd
man/qcHist.Rd
man/rankConsesus.Rd
man/runGOSEQ.Rd
man/sc3Cluster.Rd
man/sc_clust.Rd
man/sc_clustUI.Rd
man/sc_comp.Rd
man/sc_compUI.Rd
man/sc_de.Rd
man/sc_deUI.Rd
man/sc_dorothea_plot.Rd
man/sc_dorothea_viper.Rd
man/sc_faUI.Rd
man/sc_fa_Server.Rd
man/sc_getAllDE.Rd
man/sc_getDEgenes.Rd
man/sc_go.Rd
man/sc_goUI.Rd
man/sc_loadData.Rd
man/sc_loadDataUI.Rd
man/sc_norm.Rd
man/sc_normUI.Rd
man/sc_progeny.Rd
man/sc_progeny_plot.Rd
man/sc_qc.Rd
man/sc_qcUI.Rd
man/server.Rd
man/seuratElbow.Rd
man/seuratQC.Rd
man/startBingleSeq.Rd
man/sueratClust.Rd
man/ui.Rd
package_references.txt
