clone_so: Add clone information to meta data of seurat object and bin...

In dkzhang777/SlideCNA: Calls Copy Number Alterations from Slide-Seq Data

Add clone information to meta data of seurat object and bin the beads

Description

This function adds another column for cluster designation to a seurat object's meta data and bins beads

Usage

clone_so(so, hcl_sub, md, mal = FALSE)

Arguments

so	Seurat object of beads and their meta data
hcl_sub	hierarchical clustering object of cluster assignemnt as outputted from SlideCNA::plot_clones()
md	data.table of metadata of each bead
mal	TRUE if only using malignant beads

Value

A seurat object updated with clone information

dkzhang777/SlideCNA documentation built on Jan. 25, 2025, 5:53 p.m.