cnv_heatmap: Plot CNV scores on a heat map

In dkzhang777/SlideCNA: Calls Copy Number Alterations from Slide-Seq Data

Plot CNV scores on a heat map

Description

This function prepares data for plotting and makes a heat map of CNV scores per bead across all genes

Usage

cnv_heatmap(
  cnv_data,
  md,
  chrom_colors,
  hc_function = "ward.D2",
  plot_directory
)

Arguments

cnv_data	list object of cnv data from SlideCNA::prep_cnv_dat()
md	data.table of metadata of each bead
chrom_colors	vector of colors labeled by which chromosome they correspond to
hc_function	character for which hierarchical clustering function to use
plot_directory	output plot directory path

Value

None

dkzhang777/SlideCNA documentation built on Jan. 25, 2025, 5:53 p.m.