ref_adj: Adjust for Reference (Normal) Beads
In dkzhang777/SlideCNA: Calls Copy Number Alterations from Slide-Seq Data
ref_adj R Documentation
Adjust for Reference (Normal) Beads
Description
Take in a data.table of genomic positions and smoothed, centered expression intensities counts and
adjust for reference beads by subtracting average intensities of reference beads for each gene.
This is the second reference adjustment.
Usage
ref_adj(centered_rm, normal_beads)
Arguments
centered_rm
data.table of smoothed, centered expression intensities counts
normal_beads
vector of names of normal beads
Value
rm_adj data.table of smoothed relative expression intensities
dkzhang777/SlideCNA documentation built on Jan. 25, 2025, 5:53 p.m.
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| ref_adj | R Documentation |
Adjust for Reference (Normal) Beads
Description
Take in a data.table of genomic positions and smoothed, centered expression intensities counts and adjust for reference beads by subtracting average intensities of reference beads for each gene. This is the second reference adjustment.
Usage
ref_adj(centered_rm, normal_beads)
Arguments
centered_rm |
data.table of smoothed, centered expression intensities counts |
normal_beads |
vector of names of normal beads |
Value
rm_adj data.table of smoothed relative expression intensities
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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