quantile_plot: Plot CNV score quantiles per bin and per chromosome

In dkzhang777/SlideCNA: Calls Copy Number Alterations from Slide-Seq Data

Plot CNV score quantiles per bin and per chromosome

Description

This function colors and plots each bin by its CNV score quantiles (min, 1st quartile, median, 3rd quartile, max) on spatial coordinates for each chromosome

Usage

quantile_plot(
  cnv_data,
  cluster_label = "seurat_clusters",
  text_size,
  title_size,
  legend_height_bar,
  plot_directory
)

Arguments

cnv_data	list object of cnv data from SlideCNA::prep_cnv_dat()
cluster_label	character string of which column name to keep
text_size	integer of text size for ggplot
title_size	integer of title size for ggplot
legend_height_bar	integer of bar height of legend for ggplot
plot_directory	output plot directory path

Value

None

dkzhang777/SlideCNA documentation built on Jan. 25, 2025, 5:53 p.m.