LumiBatch2gct: convert a LumiBatch to a GCT object
In drmjc/microarrays: A collection of microarray and genomic helper code.
Description
Usage
Arguments
Value
TODO
Author(s)
Description
convert a LumiBatch to a GenePattern GCT object. There
must be an fData(x)$Description column.
Usage
1
LumiBatch2gct(x, description.column = "Description")
Arguments
x
a LumiBatch object
description.column
the description column within
fData(x) to grab the data for the resultant
Description column in the GCT.
Value
a GCT object. this is currently just a data.frame
representation.
TODO
- have a GCT class, and an as.gct method to
convert the various types to GCT-class -
LumiBatch2res, which would need a LumiBatch2calls method
Author(s)
Mark Cowley, 2012-05-02
drmjc/microarrays documentation built on May 15, 2019, 2:26 p.m.
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Description Usage Arguments Value TODO Author(s)
Description
convert a LumiBatch to a GenePattern GCT object. There
must be an fData(x)$Description column.
Usage
1 | LumiBatch2gct(x, description.column = "Description")
|
Arguments
x |
a LumiBatch object |
description.column |
the description column within
|
Value
a GCT object. this is currently just a data.frame
representation.
TODO
- have a GCT class, and an as.gct method to
convert the various types to GCT-class -
LumiBatch2res, which would need a LumiBatch2calls method
Author(s)
Mark Cowley, 2012-05-02
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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