Files in drmjc/microarrays
A collection of microarray and genomic helper code.
DESCRIPTION
NAMESPACE
R/DetectionCalls.R
R/ExtractionSoftware.R
R/LumiBatch-methods.R
R/LumiBatch2GEOarchive.R
R/LumiBatch2gct.R
R/RankProd.utils.R
R/agilent.utils.R
R/as.data.frame-methods.R
R/average.pval.replicates-methods.R
R/average.replicates-methods.R
R/barplot_lmFit.R
R/barplot_tt.R
R/blatGene.R
R/calc.best.probe.topTable.R
R/collapse-methods.R
R/collapse.topTable.R
R/convert.partek2topTable.R
R/dotplot-methods.R
R/export.gsea.rnk.RankProd.R
R/hist_pvals.pi0.R
R/import.illumina.bgx.R
R/lowessMA.R
R/merge.topTable.R
R/mget.chain.R
R/mget.multi.R
R/mget2.R
R/microarrays-package.R
R/normalizeQuantiles.list.R
R/plotMA.all.R
R/plot_arrayWeights.R
R/plot_cor.toptable.R
R/plot_exprs_vs_detection-methods.R
R/plot_genespringGX.lines.R
R/plot_lumi.QC.all.R
R/sort-methods.R
R/subset.MArrayLM.R
R/subset.eSet.R
R/summarise.dabg.R
R/toptable.utilities.R
README.md
inst/scripts/do_LumiBatch2GEO.R
inst/tests/sample_GenomeStudio_output_9x3.txt
inst/tests/test-LumiBatch2GEO.R
inst/tests/test-average.pval.replicates.R
inst/tests/test-average.replicates.R
man/DEgenes.topTable.Rd
man/DetectionCalls-methods.Rd
man/ExtractionSoftware-methods.Rd
man/LumiBatch2GEOarchive.Rd
man/LumiBatch2gct.Rd
man/RankProd.signed.score.Rd
man/agilent.miRNA.cbind.Rd
man/agilent.miRNA.filter.GX10.Rd
man/agilent.miRNA.normalise.GX10.Rd
man/agilent.miRNA.preprocess.GX10.Rd
man/agilent.miRNA.preprocess.Rd
man/agilent.miRNA.threshold.GX10.Rd
man/as.data.frame.AnnotatedDataFrame.Rd
man/average.pval.replicates-methods.Rd
man/average.replicates-methods.Rd
man/barplot_lmFit.Rd
man/blatGene.Rd
man/calc.best.probe.topTable.Rd
man/catplot.RankProd.Rd
man/collapse-methods.Rd
man/collapse.topTable.Rd
man/controlDataSetter-methods.Rd
man/convert.partek2topTable.Rd
man/dotplot-methods.Rd
man/export.DEgenes.topTable.Rd
man/export.gsea.rnk.RankProd.Rd
man/export.topTable.Rd
man/hist_pvals_pi0.Rd
man/import.Agilent.GeneView.Experiment.Rd
man/import.Agilent.GeneView.File.Rd
man/import.agilent.Rd
man/import.agilent.column2table.Rd
man/import.illumina.bgx.Rd
man/is.topTable.list.Rd
man/logFC2signedFC.Rd
man/lowessMA.Rd
man/make.sample.info.Agilent.Rd
man/merge_topTable.Rd
man/mget.chain.Rd
man/mget.multi.Rd
man/mget2.Rd
man/microarrays-package.Rd
man/normalizeQuantiles.list.Rd
man/plotMA.all.Rd
man/plot_arrayWeights.Rd
man/plot_cor_topTable.Rd
man/plot_dabg_vs_rma.Rd
man/plot_exprs_vs_detection-methods.Rd
man/plot_genespringGX_lines.Rd
man/plot_lumi_QC_all.Rd
man/plot_venn2D_topTable.Rd
man/plot_venn3D_topTable.Rd
man/round.topTable.Rd
man/sampleNamesSetter-methods.Rd
man/sort-methods.Rd
man/subset-LumiBatch-methods.Rd
man/subset.MArrayLM.Rd
man/subset.eSet.Rd
man/summarise.dabg.Rd
man/summarise.topTable.Rd
man/summarise.topTable.list.Rd
man/summarise.topTable.updown.Rd
man/topTable.SE.Rd
man/topTable.all.Rd
man/topTable.fixFC.Rd
man/topTable.to.label.Rd
man/transform_Agilent_log.Rd
man/volcanoplot_topTable.Rd
man/volcanoplot_topTable_PandQ.Rd
tests/test-all.R
