topTable.to.label: Take a toptable (Fstat or t-stat) and make a label for each...
In drmjc/microarrays: A collection of microarray and genomic helper code.
Description
Usage
Arguments
Value
Author(s)
Description
Take a toptable (Fstat or t-stat) and make a label for
each row.
Usage
1
2
topTable.to.label(tt, probes = NULL,
probe2genesymbol = NULL)
Arguments
tt
a toptable
probes
if NULL, all probes from
tt$ID are used. otherwise, probes can be a numeric
vector (eg 1 10) or character vector corresponding to
tt$ID
probe2genesymbol
a 2 column data.frame with
probe ID's in column 1, and gene symbols in column 2. If
there's no gene symbol for a probe, then there should be
an NA.
Value
a character vector with same length as probes, eg:
[1] "probeset:10543233 F=1964 P=7.17e-13 FDR=1.16e-10"
[2] "probeset: 10410211 t=9.26 P=8.49e-06 FDR=0.0193"
Author(s)
Mark Cowley, 2009-07-16
drmjc/microarrays documentation built on May 15, 2019, 2:26 p.m.
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Description Usage Arguments Value Author(s)
Description
Take a toptable (Fstat or t-stat) and make a label for each row.
Usage
1 2 | topTable.to.label(tt, probes = NULL,
probe2genesymbol = NULL)
|
Arguments
tt |
a toptable |
probes |
if |
probe2genesymbol |
a 2 column |
Value
a character vector with same length as probes, eg:
[1] "probeset:10543233 F=1964 P=7.17e-13 FDR=1.16e-10"
[2] "probeset: 10410211 t=9.26 P=8.49e-06 FDR=0.0193"
Author(s)
Mark Cowley, 2009-07-16
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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