Description Usage Arguments Value Author(s)
Venn Diagram from 2 topTable objects Plot a Venn Diagram of the differentially expressed genes within 2 topTable objects. Generates a 4x3 panel of plots, 1 per each p.threshold, q.thresh, logFC.thresh and top N sizes, where N defaults to 50, 100, 200.
1 2 3 4 5 |
tt1 |
a |
tt2 |
a |
p.thresh |
a vector of P Value thresholds, 1 per Venn Diagram |
q.thresh |
a vector of FDR thresholds, 1 per Venn Diagram |
logFC.thresh |
a vector of logFC thresholds, 1 per Venn Diagram |
sizes |
a vector of top N sizes |
names |
the names of the 2 topTable objects. default=“A”, “B” |
none.
Mark Cowley, 2011-08-02
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