Description Usage Arguments Value Author(s) See Also
Summarise a toptable into the up/down regulated genes
1 2 3 4 | summarise.topTable.updown(tt,
p.thresh = c(0.05, 0.001, 1e-04),
q.thresh = c(0.25, 0.1, 0.05),
logFC.thresh = c(0.585, 1, 2))
|
tt |
a limma |
p.thresh |
a vector of p value thresholds, set to
|
q.thresh |
a vector of adj.P.Val thresholds, set to
|
logFC.thresh |
a vector of absolute logFC value thresholds |
a data.frame of counts of differentially expressed genes
Mark Cowley
summarise.topTable
,
summarise.topTable.list
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