summarise.topTable.list: Summarise a list of topTables.

In drmjc/microarrays: A collection of microarray and genomic helper code.

Description

This represnts a new style of summary, where N top tables makes N columns (plus some descriptive ones...)

Usage

  summarise.topTable.list(tt.list,
    p.thresh = c(0.05, 0.001, 1e-04),
    q.thresh = c(0.25, 0.1, 0.05),
    logFC.thresh = c(0.585, 1, 2))

Arguments

tt.list	must be a list of toptable objects, and no F stat tables. all need to have logFC columns.
p.thresh	a numberic vector of p-value threhshlds to use. set to NULL if not required.
q.thresh	a numeric vector of q-value threhsolds to use. set to NULL if not required
logFC.thresh	a numeric vector of absolute logFC threhsolds to use. set to NULL if not required

Value

a data.frame See also: summarise.topTable, summarise.topTable.updown

Author(s)

Mark Cowley, 2009-12-21

drmjc/microarrays documentation built on May 15, 2019, 2:26 p.m.