plot_venn3D_topTable: Venn Diagram from 3 topTable objects Plot a Venn Diagram of...
In drmjc/microarrays: A collection of microarray and genomic helper code.

Description Usage Arguments Value Author(s)

Venn Diagram from 3 topTable objects Plot a Venn Diagram of the differentially expressed genes within 3 topTable objects. Generates a 4x3 panel of plots, 1 per each p.threshold, q.thresh, logFC.thresh and top N sizes, where N defaults to 50, 100, 200.

  plot_venn3D_topTable(tt1, tt2, tt3,
    p.thresh = c(0.05, 0.001, 1e-04),
    q.thresh = c(0.25, 0.1, 0.05),
    logFC.thresh = c(0.585, 1, 2), sizes = c(50, 100, 250),
    names = LETTERS[1:3])

`tt1`	a `data.frame` from `topTable`
`tt2`	a `data.frame` from `topTable`
`tt3`	a `data.frame` from `topTable`
`p.thresh`	a vector of P Value thresholds, 1 per Venn Diagram
`q.thresh`	a vector of FDR thresholds, 1 per Venn Diagram
`logFC.thresh`	a vector of logFC thresholds, 1 per Venn Diagram
`sizes`	a vector of top N sizes
`names`	the names of the 3 topTable objects. default=“A”, “B”, “C”