ti_elpicycle: ElPiGraph - Cycle

View source: R/ti_elpicycle.R

ti_elpicycleR Documentation

ElPiGraph - Cycle

Description

Will generate a trajectory using ElPiGraph - Cycle.

This method was wrapped inside a container. The original code of this method is available here.

Usage

ti_elpicycle(
  NumNodes = 50L,
  NumEdges = 100000L,
  InitNodes = 2L,
  Mu = 0.1,
  Lambda = 0.01,
  MaxNumberOfIterations = 10L,
  eps = 0.01,
  CenterData = FALSE
)

Arguments

NumNodes

The number of nodes of the principal graph. Domain: U(2, 1000). Default: 50. Format: integer.

NumEdges

The maximum number of edges. Domain: e^U(0.69, 11.51). Default: 100000. Format: integer.

InitNodes

Number of points to include in the initial graph. Domain: e^U(0.69, 6.91). Default: 2. Format: integer.

Mu

Controls the elastic energy. Domain: e^U(-6.91, 0.00). Default: 0.1. Format: numeric.

Lambda

Controls the elastic energy. Domain: e^U(-6.91, 0.00). Default: 0.01. Format: numeric.

MaxNumberOfIterations

Maximum number of steps to embed the nodes. Domain: e^U(0.00, 6.91). Default: 10. Format: integer.

eps

Minimal relative change in the position of the nodes to stop embedment. Domain: e^U(-6.91, 0.00). Default: 0.01. Format: numeric.

CenterData

Should data and initial node positions be centered?. Default: FALSE. Format: logical.

Value

A TI method wrapper to be used together with infer_trajectory


dynverse/dynmethods documentation built on Jan. 18, 2024, 4:44 a.m.