ti_pcreode: pCreode

In dynverse/dynmethods: A collection of trajectory inference methods

pCreode

Description

Will generate a trajectory using pCreode.

This method was wrapped inside a container. The original code of this method is available here.

Usage

ti_pcreode(n_pca_components = 3L, num_runs = 10L)

Arguments

n_pca_components	. Domain: U(2, 10). Default: 3. Format: integer.
num_runs	. Domain: e^U(2.30, 4.61). Default: 10. Format: integer.

Value

A TI method wrapper to be used together with infer_trajectory

References

Herring, C.A., Banerjee, A., McKinley, E.T., Simmons, A.J., Ping, J., Roland, J.T., Franklin, J.L., Liu, Q., Gerdes, M.J., Coffey, R.J., Lau, K.S., 2018. Unsupervised Trajectory Analysis of Single-Cell RNA-Seq and Imaging Data Reveals Alternative Tuft Cell Origins in the Gut. Cell Systems 6, 37–51.e9.

dynverse/dynmethods documentation built on Jan. 18, 2024, 4:44 a.m.