ti_matcher: MATCHER

In dynverse/dynmethods: A collection of trajectory inference methods

MATCHER

Description

Will generate a trajectory using MATCHER.

This method was wrapped inside a container. The original code of this method is available here.

Usage

ti_matcher(quantiles = 50L, method = "linear")

Arguments

quantiles	Quantiles How many quantiles to use when computing warp functions (integer). Domain: U(2, 500). Default: 50. Format: integer.
method	Gaussian process regression or linear interpolation? ("gp" or "linear). Domain: gp, linear. Default: linear. Format: character.

Value

A TI method wrapper to be used together with infer_trajectory

References

Welch, J.D., Hartemink, A.J., Prins, J.F., 2017. MATCHER: manifold alignment reveals correspondence between single cell transcriptome and epigenome dynamics. Genome Biology 18.

dynverse/dynmethods documentation built on Jan. 18, 2024, 4:44 a.m.