ti_gng: GNG

In dynverse/dynmethods: A collection of trajectory inference methods

GNG

Description

Will generate a trajectory using GNG.

This method was wrapped inside a container. The original code of this method is available here.

Usage

ti_gng(
  dimred = "landmark_mds",
  ndim = 5L,
  max_iter = 15000L,
  max_nodes = 8L,
  apply_mst = TRUE
)

Arguments

dimred	Which dimensionality reduction method to use. Domain: pca, mds, tsne, ica, lle, landmark_mds, mds_sammon, mds_isomds, mds_smacof, umap, dm_diffusionMap. Default: landmark_mds. Format: character.
ndim	The number of dimensions. Domain: U(2, 10). Default: 5. Format: integer.
max_iter	The max number of iterations. Domain: e^U(3.22, 13.82). Default: 15000. Format: numeric.
max_nodes	The maximum number of nodes. Domain: U(2, 30). Default: 8. Format: integer.
apply_mst	If true, an MST post-processing of the GNG is performed. Default: TRUE. Format: logical.

Value

A TI method wrapper to be used together with infer_trajectory

dynverse/dynmethods documentation built on Jan. 18, 2024, 4:44 a.m.