ti_elpigraph: ElPiGraph

Description Usage Arguments Value

Description

Will generate a trajectory using ElPiGraph.

This method was wrapped inside a container. The original code of this method is available here.

Usage

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ti_elpigraph(topology = "tree", NumNodes = 50L, NumEdges = 100000L,
  InitNodes = 2L, Mu = 0.1, Lambda = 0.01,
  MaxNumberOfIterations = 10L, eps = 0.01, CenterData = FALSE)

Arguments

topology

The kind of topology to detect. Domain: cycle, tree, linear. Default: tree. Format: character.

NumNodes

The number of nodes of the principal graph. Domain: U(2, 1000). Default: 50. Format: integer.

NumEdges

The maximum number of edges. Domain: e^U(0.69, 11.51). Default: 100000. Format: integer.

InitNodes

Number of points to include in the initial graph. Domain: e^U(0.69, 6.91). Default: 2. Format: integer.

Mu

Controls the elastic energy. Domain: e^U(-6.91, 0.00). Default: 0.1. Format: numeric.

Lambda

Controls the elastic energy. Domain: e^U(-6.91, 0.00). Default: 0.01. Format: numeric.

MaxNumberOfIterations

Maximum number of steps to embed the nodes. Domain: e^U(0.00, 6.91). Default: 10. Format: integer.

eps

Minimal relative change in the position of the nodes to stop embedment. Domain: e^U(-6.91, 0.00). Default: 0.01. Format: numeric.

CenterData

Should data and initial node positions be centered?. Default: FALSE. Format: logical.

Value

A TI method wrapper to be used together with infer_trajectory


dynverse/dynmethods documentation built on July 6, 2019, 11:30 a.m.