ti_elpigraph: ElPiGraph

In dynverse/dynmethods: A collection of trajectory inference methods

ElPiGraph

Description

Will generate a trajectory using ElPiGraph.

This method was wrapped inside a container. The original code of this method is available here.

Usage

ti_elpigraph(
  topology = "tree",
  NumNodes = 50L,
  NumEdges = 100000L,
  InitNodes = 2L,
  Mu = 0.1,
  Lambda = 0.01,
  MaxNumberOfIterations = 10L,
  eps = 0.01,
  CenterData = FALSE
)

Arguments

topology	The kind of topology to detect. Domain: cycle, tree, linear. Default: tree. Format: character.
NumNodes	The number of nodes of the principal graph. Domain: U(2, 1000). Default: 50. Format: integer.
NumEdges	The maximum number of edges. Domain: e^U(0.69, 11.51). Default: 100000. Format: integer.
InitNodes	Number of points to include in the initial graph. Domain: e^U(0.69, 6.91). Default: 2. Format: integer.
Mu	Controls the elastic energy. Domain: e^U(-6.91, 0.00). Default: 0.1. Format: numeric.
Lambda	Controls the elastic energy. Domain: e^U(-6.91, 0.00). Default: 0.01. Format: numeric.
MaxNumberOfIterations	Maximum number of steps to embed the nodes. Domain: e^U(0.00, 6.91). Default: 10. Format: integer.
eps	Minimal relative change in the position of the nodes to stop embedment. Domain: e^U(-6.91, 0.00). Default: 0.01. Format: numeric.
CenterData	Should data and initial node positions be centered?. Default: FALSE. Format: logical.

Value

A TI method wrapper to be used together with infer_trajectory

dynverse/dynmethods documentation built on Jan. 18, 2024, 4:44 a.m.