BayesSpace: BayesSpace: A package for processing spatial transcriptomes
In edward130603/BayesSpace: Clustering and Resolution Enhancement of Spatial Transcriptomes
BayesSpace R Documentation
BayesSpace: A package for processing spatial transcriptomes
Description
Tools for clustering and enhancing the resolution of spatial gene expression
experiments. BayesSpace clusters a low-dimensional representation of the gene
expression matrix, incorporating a spatial prior to encourage neighboring
spots to cluster together. The method can enhance the resolution of the
low-dimensional representation into "sub-spots", for which features such as
gene expression or cell type composition can be imputed.
Details
For an overview of the functionality provided by the package, please see the
vignette:
vignette("BayesSpace", package="BayesSpace")
Author(s)
Maintainer: Matt Stone mstone@fredhutch.org
Authors:
Edward Zhao ezhao@fredhutch.org
Other contributors:
Xing Ren xren2@fredhutch.org [contributor]
Raphael Gottardo rgottard@fredhutch.org [contributor]
See Also
Useful links:
edward130603/BayesSpace documentation built on Oct. 23, 2024, 7:04 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| BayesSpace | R Documentation |
BayesSpace: A package for processing spatial transcriptomes
Description
Tools for clustering and enhancing the resolution of spatial gene expression experiments. BayesSpace clusters a low-dimensional representation of the gene expression matrix, incorporating a spatial prior to encourage neighboring spots to cluster together. The method can enhance the resolution of the low-dimensional representation into "sub-spots", for which features such as gene expression or cell type composition can be imputed.
Details
For an overview of the functionality provided by the package, please see the
vignette:
vignette("BayesSpace", package="BayesSpace")
Author(s)
Maintainer: Matt Stone mstone@fredhutch.org
Authors:
Edward Zhao ezhao@fredhutch.org
Other contributors:
Xing Ren xren2@fredhutch.org [contributor]
Raphael Gottardo rgottard@fredhutch.org [contributor]
See Also
Useful links:
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.