dot-make_vertices: Make vertices outlining spots/subspots for geom_polygon()
In edward130603/BayesSpace: Clustering and Resolution Enhancement of Spatial Transcriptomes
.make_vertices R Documentation
Make vertices outlining spots/subspots for geom_polygon()
Description
Make vertices outlining spots/subspots for geom_polygon()
Usage
.make_vertices(sce, fill, platform, is.enhanced, nsubspots.per.edge = 3)
Arguments
sce
SingleCellExperiment with row/col in colData
fill
Name of a column in colData(sce) or a vector of values to
use as fill for each spot
platform
"Visium", "VisiumHD" or"ST", used to determine spot layout
is.enhanced
If true, sce contains enhanced subspot data instead
of spot-level expression. Used to determine spot layout.
Value
Table of (x.pos, y.pos, spot, fill); where spot groups the
vertices outlining the spot's border
edward130603/BayesSpace documentation built on Oct. 23, 2024, 7:04 a.m.
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| .make_vertices | R Documentation |
Make vertices outlining spots/subspots for geom_polygon()
Description
Make vertices outlining spots/subspots for geom_polygon()
Usage
.make_vertices(sce, fill, platform, is.enhanced, nsubspots.per.edge = 3)
Arguments
sce |
SingleCellExperiment with row/col in colData |
fill |
Name of a column in |
platform |
"Visium", "VisiumHD" or"ST", used to determine spot layout |
is.enhanced |
If true, |
Value
Table of (x.pos, y.pos, spot, fill); where spot groups the
vertices outlining the spot's border
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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