dot-prepare_inputs: Prepare cluster/deconvolve inputs from SingleCellExperiment...
In edward130603/BayesSpace: Clustering and Resolution Enhancement of Spatial Transcriptomes
.prepare_inputs R Documentation
Prepare cluster/deconvolve inputs from SingleCellExperiment object
Description
Prepare cluster/deconvolve inputs from SingleCellExperiment object
Usage
.prepare_inputs(
sce,
use.dimred = "PCA",
d = 15,
positions = NULL,
position.cols = c("imagecol", "imagerow"),
radius = NULL,
xdist = NULL,
ydist = NULL
)
Value
List of PCs, names of columns with x/y positions, and inter-spot
distances
edward130603/BayesSpace documentation built on May 11, 2023, 6:13 a.m.
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| .prepare_inputs | R Documentation |
Prepare cluster/deconvolve inputs from SingleCellExperiment object
Description
Prepare cluster/deconvolve inputs from SingleCellExperiment object
Usage
.prepare_inputs(
sce,
use.dimred = "PCA",
d = 15,
positions = NULL,
position.cols = c("imagecol", "imagerow"),
radius = NULL,
xdist = NULL,
ydist = NULL
)
Value
List of PCs, names of columns with x/y positions, and inter-spot distances
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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