dot-find_neighbors: Find neighboring spots based on array coordinates
In edward130603/BayesSpace: Clustering and Resolution Enhancement of Spatial Transcriptomes
.find_neighbors R Documentation
Find neighboring spots based on array coordinates
Description
Find neighboring spots based on array coordinates
Usage
.find_neighbors(sce, platform)
Arguments
sce
SingleCellExperiment
platform
If "Visium", select six neighboring spots around center; if
"ST", select four adjacent spots.
Value
df_j a list of neighbor indices (zero-indexed) for each spot
edward130603/BayesSpace documentation built on May 11, 2023, 6:13 a.m.
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| .find_neighbors | R Documentation |
Find neighboring spots based on array coordinates
Description
Find neighboring spots based on array coordinates
Usage
.find_neighbors(sce, platform)
Arguments
sce |
SingleCellExperiment |
platform |
If "Visium", select six neighboring spots around center; if "ST", select four adjacent spots. |
Value
df_j a list of neighbor indices (zero-indexed) for each spot
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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