deconvolve: Wrapper around C++ 'iterate_deconv()' function

In edward130603/BayesSpace: Clustering and Resolution Enhancement of Spatial Transcriptomes

Wrapper around C++ iterate_deconv() function

Description

Wrapper around C++ iterate_deconv() function

Usage

deconvolve(
  Y,
  positions,
  xdist,
  ydist,
  scalef,
  q,
  spot_neighbors,
  init,
  nrep = 1000,
  thin = 100,
  model = "normal",
  platform = c("Visium", "VisiumHD", "ST"),
  nsubspots.per.edge = 3,
  verbose = TRUE,
  jitter.scale = 5,
  jitter.prior = 0.01,
  adapt.before = 100,
  mu0 = colMeans(Y),
  gamma = 2,
  lambda0 = diag(0.01, nrow = ncol(Y)),
  alpha = 1,
  beta = 0.01,
  cores = 1
)

Value

List of enhancement parameter values at each iteration

edward130603/BayesSpace documentation built on Oct. 23, 2024, 7:04 a.m.