exampleSCE: Create minimal 'SingleCellExperiment' for documentation...
In edward130603/BayesSpace: Clustering and Resolution Enhancement of Spatial Transcriptomes
exampleSCE R Documentation
Create minimal SingleCellExperiment for documentation examples.
Description
Create minimal SingleCellExperiment for documentation examples.
Usage
exampleSCE(nrow = 8, ncol = 12, n_genes = 100, n_PCs = 10)
Arguments
nrow
Number of rows of spots
ncol
Number of columns of spots
n_genes
Number of genes to simulate
n_PCs
Number of principal components to include
Details
Inspired by scuttle's mockSCE().
Value
A SingleCellExperiment object with simulated counts, corresponding
logcounts and PCs, and positional data in colData. Spots are
distributed over an (nrow x ncol) rectangle.
Examples
set.seed(149)
sce <- exampleSCE()
edward130603/BayesSpace documentation built on May 11, 2023, 6:13 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| exampleSCE | R Documentation |
Create minimal SingleCellExperiment for documentation examples.
Description
Create minimal SingleCellExperiment for documentation examples.
Usage
exampleSCE(nrow = 8, ncol = 12, n_genes = 100, n_PCs = 10)
Arguments
nrow |
Number of rows of spots |
ncol |
Number of columns of spots |
n_genes |
Number of genes to simulate |
n_PCs |
Number of principal components to include |
Details
Inspired by scuttle's mockSCE().
Value
A SingleCellExperiment object with simulated counts, corresponding
logcounts and PCs, and positional data in colData. Spots are
distributed over an (nrow x ncol) rectangle.
Examples
set.seed(149)
sce <- exampleSCE()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.