dot-make_subspot_coldata: Add subspot labels and offset row/col locations before making...

In edward130603/BayesSpace: Clustering and Resolution Enhancement of Spatial Transcriptomes

Add subspot labels and offset row/col locations before making enhanced SCE.

Description

Subspots are stored as (1.1, 2.1, 3.1, ..., 1.2, 2.2, 3.2, ...)

Usage

.make_subspot_coldata(
  cdata,
  sce,
  subspot_neighbors,
  platform,
  nsubspots.per.edge = 3
)

Arguments

cdata	Table of colData (imagerow and imagecol; from deconv$positions)
sce	Original sce (to obtain number of spots and original row/col)
subspot_neighbors	Neighbors for subspots
platform	Spatial transcriptomic platform
nsubspots.per.edge	Number of subspots per edge if the spot is squared

Value

Data frame with added subspot names, parent spot indices, and offset row/column coordinates

edward130603/BayesSpace documentation built on Oct. 23, 2024, 7:04 a.m.