cr_add_subtype_specificity: Add subtype specificity columns in cr
In eilslabs/epic: Integrative Analysis and Visualization of Epigenomic Sequencing Data
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
Add subtype specificity columns in cr
Usage
1
cr_add_subtype_specificity(cr, cutoff = 0.05, suffix = "_ss")
Arguments
cr
correlated regions generated by filter_correlated_regions or reduce_cr
cutoff
cutoff for p-values of ANOVA test
suffix
suffix of column names
Details
If factor is set in correlated_regions, this function can assign subtype specificity to each subtype.
We use following digits to represent subtype specificity: 1 is defined as the methylation is higher than all other subtypes and the difference is significant.
-1 is defined as the methylation is lower than all other subtypes and the difference is significant.
All the others are defined as 0.
Value
A GRanges object
Author(s)
Zuguang Gu <z.gu@dkfz.de>
Examples
1
2
# There is no example
NULL
eilslabs/epic documentation built on May 16, 2019, 1:24 a.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
Add subtype specificity columns in cr
Usage
1 | cr_add_subtype_specificity(cr, cutoff = 0.05, suffix = "_ss")
|
Arguments
cr |
correlated regions generated by |
cutoff |
cutoff for p-values of ANOVA test |
suffix |
suffix of column names |
Details
If factor is set in correlated_regions, this function can assign subtype specificity to each subtype.
We use following digits to represent subtype specificity: 1 is defined as the methylation is higher than all other subtypes and the difference is significant. -1 is defined as the methylation is lower than all other subtypes and the difference is significant. All the others are defined as 0.
Value
A GRanges object
Author(s)
Zuguang Gu <z.gu@dkfz.de>
Examples
1 2 | # There is no example
NULL
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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