genomic_corr_pintersect: Intersection between two sets of genomic regions

In eilslabs/epic: Integrative Analysis and Visualization of Epigenomic Sequencing Data

Description

Intersection between two sets of genomic regions

Usage

genomic_corr_pintersect(query, reference, ...)

Arguments

query	genomic region 1, a GRanges object
reference	genomic region 2, a GRanges object
...	pass to percentOverlaps

Details

For each region in query, it calculates the percent that is covered by reference.

The returned value is percent which is how much query is covered by reference.

Be careful with the strand in your GRanges object!

Value

A single correlation value.

Author(s)

Zuguang Gu <[e-mail]>

See Also

genomic_regions_correlation

Examples

gr1 = GRanges(seqnames = "chr1", ranges = IRanges(c(1, 5), c(3, 8)))
gr2 = GRanges(seqnames = "chr1", ranges = IRanges(c(2, 6), c(4, 8)))
genomic_corr_pintersect(gr1, gr2)

eilslabs/epic documentation built on May 16, 2019, 1:24 a.m.