API for eilslabs/epic
Integrative Analysis and Visualization of Epigenomic Sequencing Data

Global functions
add_chord_diagram_legend Source code
annotate_to_gene_models Man page Source code
annotate_to_genomic_features Man page Source code
available_gencode_fields Man page Source code
basic_genomic_regions_stat Man page Source code
binary_search Man page Source code Source code
bp Man page Source code
check_system_command Source code
chipseq_hooks Man page Source code
chromatin_states_transition_chord_diagram Man page Source code
common_regions Man page Source code
compare_meth Source code
constructAnnotationTrack Source code
cor_columns Man page Source code
correlated_regions Man page Source code
correlated_regions_per_gene Source code
cr_add_subtype_specificity Man page Source code
cr_enriched_at_tss Man page Source code
cr_gviz Man page Source code
cr_hilbert Man page Source code
cr_overlap_to_genomic_features Man page Source code
cr_qc Source code
cr_scatterplot_me Man page Source code
diameter Source code
enrich_with_histone_mark Source code
enrich_with_methylation Source code
enriched_heatmap_list_on_gene Man page Source code
enriched_heatmap_list_on_genomic_features Man page Source code
enriched_heatmap_list_on_tss_cgi Man page Source code
epic Man page Source code
extract_field_from_gencode Man page Source code
extract_sites Man page Source code Source code
filter_correlated_regions Man page Source code
find_neighbours Man page Source code
genomic_corr_absdist Man page Source code
genomic_corr_jaccard Man page Source code
genomic_corr_nintersect Man page Source code
genomic_corr_pintersect Man page Source code
genomic_corr_reldist Man page Source code
genomic_corr_sintersect Man page Source code
genomic_regions_correlation Man page Source code
get_mean_methylation_in_genomic_features Man page Source code
get_peak_list Man page Source code
global_methylation_distribution Man page Source code
heatmap_diff_methylation_in_genomic_features Man page Source code
is.file Source code
kb Man page Source code
load_config Man page Source code
logical_segment Man page Source code
make_transition_matrix_from_chromHMM Man page Source code
mat_dist Source code
mb Man page Source code
methylation_hooks Man page Source code
methylation_subtype_classfication Man page Source code
order_chr Source code
percentOverlaps Man page Source code
pipeline_step Source code
plot_coverage_and_methylation_on_genome Man page Source code
plot_multiple_samples_methylation_on_genome Man page Source code
plot_subgroup_specificity_heatmap Man page Source code
print.bp Man page Source code
pushTrackList Source code
readRDS_or_readRData Source code
reduce2 Man page Source code
reduce_cr Man page Source code
reduce_cr_gap_test Man page Source code
return2 Source code
rowWhichMax Source code Source code
run_pipeline Man page Source code
scatterplot_with_boxplot Man page Source code
set Source code
set_counter Man page Source code
set_proper_seqlengths Source code
sleep Source code
sort_chr Source code
subgroup_specific_genomic_regions Man page Source code
subset_txdb Source code
systemdf Man page Source code
top_largest_objects Source code
wgbs_qcplot Man page Source code
eilslabs/epic documentation built on May 13, 2017, 3:07 p.m.