run_pipeline: run pipeline through qsub system
In eilslabs/epic: Integrative Analysis and Visualization of Epigenomic Sequencing Data

run pipeline in HPC through job scheduling system

1	run_pipeline(config_file, prefix = "", email = NULL, enforce = FALSE, Rscript_binary = "Rscript", submit_by = "qsub")

`config_file`	path of configuration script, check `load_config` for all configurations.
`prefix`	prefix of the job name
`email`	email address if you want to be notified of your jobs
`enforce`	enforce to run all the steps even for those successfully finished jobs.
`Rscript_binary`	path of Rscript binary
`submit_by`	which job scheduling you are using

A workflow will be submitted to HPC.

Zuguang Gu <z.gu@dkfz.de>

1 2	# There is no example NULL

eilslabs/epic documentation built on May 16, 2019, 1:24 a.m.

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