cr_overlap_to_genomic_features: Enrichment of cr to other genomic features
In eilslabs/epic: Integrative Analysis and Visualization of Epigenomic Sequencing Data

Enrichment of cr to other genomic features

1	cr_overlap_to_genomic_features(cr, gf_list, species = NULL, chromosome = paste0("chr", 1:22))

`cr`	filtered correlated regions from `filter_correlated_regions`
`gf_list`	a list of `GRanges` objects
`species`	species
`chromosome`	a vector of chromosomes

There will be two plots generates:

Fold change for the intersection of genomic features to correlated regions compared to whole genome.
Intersection between genomic features and correlated regions

A list of two matrix:

a matrix with how much each genomic feature that is overlapped by correlated regions
a matrix with total number of base pairs of each genomic feature that is overlapped by correlated regions.

Zuguang Gu <z.gu@dkfz.de>

1 2	# There is no example NULL

eilslabs/epic documentation built on May 16, 2019, 1:24 a.m.

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