cr_gviz: Customized Gviz plot for a gene model

Description Usage Arguments Details Value Author(s) Examples

Description

Customized Gviz plot for a gene model

Usage

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cr_gviz(cr, gi, expr, txdb, gene_start = NULL, gene_end = NULL,
    species = "hg19", gf_list = NULL, hm_list = NULL, symbol = NULL)

Arguments

cr

correlated regions generated by filter_correlated_regions

gi

gene id

expr

the expression matrix which is same as in correlated_regions

txdb

a GenomicFeatures::GRanges object.

gene_start

start position of gene

gene_end

end position of the gene

species

species

gf_list

a list of GRanges objects which contains additional annotations

hm_list

a list of GRanges

symbol

symbol of the gene

Details

Several information on the correlated regions in an extended gene model are visualized by Gviz package:

Value

No value is returned.

Author(s)

Zuguang Gu <z.gu@dkfz.de>

Examples

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# There is no example
NULL

eilslabs/epic documentation built on May 16, 2019, 1:24 a.m.