Description Usage Arguments Details Value Author(s) Examples
Customized Gviz plot for a gene model
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cr |
correlated regions generated by |
gi |
gene id |
expr |
the expression matrix which is same as in |
txdb |
a |
gene_start |
start position of gene |
gene_end |
end position of the gene |
species |
species |
gf_list |
a list of |
hm_list |
a list of |
symbol |
symbol of the gene |
Several information on the correlated regions in an extended gene model are visualized by Gviz package:
gene models. Multiple transcripts will also be plotted.
correlation for every CpG window
heatmap for methylation
significant correlated regions
CpG density
annotation to other genomic features if provided
annotation to other ChIP-Seq peak data if provided
No value is returned.
Zuguang Gu <z.gu@dkfz.de>
1 2 | # There is no example
NULL
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